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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs6459179 chr6:57003008 T/G 3.3E-6 405 15.33 15.3 7.8 KM Plot
LGG rs6460219 chr7:64453136 C/T 1.12E-5 407 13.43 10.77 15.6 KM Plot
LGG rs646334 chr20:12991639 C/T 3.4E-5 407 15.17 15.55 18.13 KM Plot
LGG rs646814 chr20:12991536 C/T 3.4E-5 407 18.13 14.97 15.2 KM Plot
LGG rs6479804 chr10:64048327 T/C 0.000116 399 12.17 15.7 15.83 KM Plot
LGG rs6499128 chr16:67439539 G/A 6.24E-5 406 15.25 16.42 16.55 KM Plot
LGG rs6499130 chr16:67488470 G/T 6.52E-5 404 15.33 15.15 18.48 KM Plot
LGG rs6499144 chr16:67890388 T/C 2.17E-11 406 15.17 18.37 6.47 KM Plot
LGG rs6533331 chr4:108919725 C/T 3.61E-5 406 4.35 14.93 15.6 KM Plot
LGG rs6547701 chr2:86874374 A/G 6.55E-15 407 15.72 14.15 6.83 KM Plot
LGG rs6556729 chr5:156023851 A/G 2.71E-5 406 16.73 14.37 11.17 KM Plot
LGG rs6556736 chr5:156030946 T/C 2.6E-5 407 16.67 14.43 11.17 KM Plot
LGG rs6556823 chr5:92814447 T/C 1.67E-5 407 15.17 16.17 18.57 KM Plot
LGG rs6556824 chr5:92856766 C/G 0.000187 406 15.17 16.83 17.93 KM Plot
LGG rs6566813 chr18:72207787 A/G 1.83E-8 407 6.63 13.63 15.37 KM Plot